tellurium
stable
Installation and Front-ends
Quick Start
Walkthrough
Usage Examples
Antimony Reference
Parameter Scan
Tellurium Methods
API
libRoadRunner Documents
SimpleSBML Documents
FAQ
Appendix
tellurium
Docs
»
Index
Edit on GitHub
Index
A
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B
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C
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D
|
E
|
F
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G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
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P
|
R
|
S
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T
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U
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V
|
W
|
X
A
accumulateTimecourse() (tellurium.plotting.engine.PlottingEngine method)
Accumulator (class in tellurium.utils.misc)
add_child() (tellurium.sedml.tesedml.SEDMLCodeFactory.TaskNode method)
addAntimony() (tellurium.dev.deprecated.tecombine.OpenCombine method)
addAntimonyStr() (tellurium.dev.deprecated.tecombine.CombineArchive method)
addAsset() (tellurium.dev.deprecated.tecombine.CombineArchive method)
addEntriesToCombineArchive() (in module tellurium.utils.omex)
addFile() (tellurium.dev.deprecated.tecombine.CombineArchive method)
(tellurium.dev.deprecated.tecombine.OpenCombine method)
addFilesToCombineArchive() (in module tellurium.tellurium)
,
[1]
addFileToCombineArchive() (in module tellurium.tellurium)
,
[1]
addPhrasedml() (tellurium.dev.deprecated.tecombine.OpenCombine method)
addPhraSEDMLStr() (tellurium.dev.deprecated.tecombine.CombineArchive method)
addReaction() (tellurium.utils.misc.Accumulator method)
addSBML() (tellurium.dev.deprecated.tecombine.OpenCombine method)
addSbmlAsset() (tellurium.teconverters.convert_omex.Omex method)
addSBMLFile() (tellurium.dev.deprecated.tecombine.CombineArchive method)
addSBMLStr() (tellurium.dev.deprecated.tecombine.CombineArchive method)
addSBOsToSBML() (tellurium.teconverters.antimony_sbo.antimonySBOParser method)
addSEDML() (tellurium.dev.deprecated.tecombine.OpenCombine method)
addSedmlAsset() (tellurium.teconverters.convert_omex.Omex method)
addSEDMLFile() (tellurium.dev.deprecated.tecombine.CombineArchive method)
addSEDMLStr() (tellurium.dev.deprecated.tecombine.CombineArchive method)
addStr() (tellurium.dev.deprecated.tecombine.CombineArchive method)
addXYDataset() (tellurium.plotting.engine.PlottingFigure method)
algorithmParameterToParameterKey() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
allowLog (tellurium.analysis.sensitivityanalysis.SensitivityAnalysis attribute)
antimonyConverter (class in tellurium.teconverters.convert_antimony)
antimonySBOConverter (class in tellurium.teconverters.antimony_sbo)
antimonySBOParser (class in tellurium.teconverters.antimony_sbo)
antimonyToCellML() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
antimonyToSBML() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
antimonyTosbml() (in module tellurium.tellurium)
antimonyToSBML() (tellurium.teconverters.convert_antimony.antimonyConverter method)
APITestCase (class in tellurium.tests.test_API)
args (tellurium.analysis.sensitivityanalysis.SensitivityAnalysis attribute)
Asset (class in tellurium.dev.deprecated.tecombine)
B
bifurcation() (in module tellurium.analysis.bifurcation)
BioModHackRemoveDuplicates() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
bounds (tellurium.analysis.sensitivityanalysis.SensitivityAnalysis attribute)
bs() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
C
cellmlFileToAntimony() (tellurium.teconverters.convert_antimony.antimonyConverter method)
cellmlToAntimony() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
cellmlToSBML() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
check_macos_ver() (in module tellurium.utils.package)
checkAntimonyReturnCode() (tellurium.teconverters.convert_antimony.antimonyConverter method)
checkfile() (tellurium.dev.deprecated.tecombine.CombineArchive method)
checkKisaoAlgorithmParameter() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
checkKisaoIntegrator() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
checkSEDMLDocument() (tellurium.sedml.tesedml.SEDMLTools class method)
clearTiledFigure() (in module tellurium.plotting.api)
collect_plotArray_result() (tellurium.analysis.parameterscan.ParameterScan method)
(tellurium.analysis.parameterscan.SteadyStateScan method)
collect_plotGraduatedArray_result() (tellurium.analysis.parameterscan.ParameterScan method)
collect_plotPolyArray_result() (tellurium.analysis.parameterscan.ParameterScan method)
colorCycle() (in module tellurium.tellurium)
,
[1]
(tellurium.analysis.parameterscan.ParameterScan method)
combine() (in module tellurium.dev.deprecated.tecombine)
COMBINE_PREFIX (tellurium.dev.deprecated.tecombine.Asset attribute)
CombineArchive (class in tellurium.dev.deprecated.tecombine)
combineArchiveFromDirectory() (in module tellurium.utils.omex)
combineArchiveFromEntries() (in module tellurium.utils.omex)
combineArchiveToPython() (in module tellurium.sedml.tesedml)
conservedMoietyAnalysis (tellurium.analysis.sensitivityanalysis.SensitivityAnalysis attribute)
containsSBMLOnly() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
convert() (tellurium.teconverters.antimony_sbo.antimonySBOConverter method)
convertAndExecuteCombineArchive() (in module tellurium.tellurium)
,
[1]
convertCombineArchive() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
createColormap() (tellurium.analysis.parameterscan.ParameterScan class method)
createColorPoints() (tellurium.analysis.parameterscan.ParameterScan method)
createCombineArchive() (in module tellurium.tellurium)
,
[1]
createSBOTermStringForElt() (tellurium.teconverters.antimony_sbo.antimonySBOConverter method)
createTaskTree() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
Creator (class in tellurium.utils.omex)
custom_plot() (in module tellurium.tellurium)
cycleMarker() (tellurium.plotting.engine.LowerTriFigure method)
(tellurium.plotting.engine.TiledFigure method)
D
DataDescriptionParser (class in tellurium.sedml.data)
dataDescriptionToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory method)
dataGeneratorToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
deprecated() (in module tellurium.utils.misc)
disablePlotting() (in module tellurium.tellurium)
distributed_parameter_scanning() (in module tellurium.tellurium)
distributed_sensitivity_analysis() (in module tellurium.tellurium)
distributed_stochastic_simulation() (in module tellurium.tellurium)
draw() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
(tellurium.visualization.sbmldiagram.SBMLDiagram method)
DumpJSONInfo() (in module tellurium.tellurium)
,
[1]
dv() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
E
elideSBOTerms() (tellurium.teconverters.antimony_sbo.antimonySBOParser method)
Entry (class in tellurium.utils.omex)
evaluableMathML() (in module tellurium.sedml.mathml)
evaluateMathML() (in module tellurium.sedml.mathml)
executeCombineArchive() (in module tellurium.sedml.tesedml)
executeInlineOmex() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
executeInlineOmexFromFile() (in module tellurium.tellurium)
,
[1]
executeOmex() (tellurium.teconverters.convert_omex.Omex method)
(tellurium.teconverters.inline_omex.inlineOmex method)
executePython() (tellurium.sedml.tesedml.SEDMLCodeFactory method)
executeSEDML() (in module tellurium.sedml.tesedml)
exportInlineOmex() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
ExportTestCase (class in tellurium.tests.test_io)
exportToAntimony() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
exportToCellML() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
exportToCombine() (tellurium.teconverters.convert_omex.Omex method)
(tellurium.teconverters.inline_omex.inlineOmex method)
exportToMatlab() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
exportToSBML() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
ExtendedRoadRunner (class in tellurium.roadrunner.extended_roadrunner)
(class in tellurium.tellurium)
,
[1]
,
[2]
,
[3]
,
[4]
extractArchive() (tellurium.dev.deprecated.tecombine.CombineArchive static method)
extractCombineArchive() (in module tellurium.utils.omex)
extractFileFromCombineArchive() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
F
f_omex_filter() (in module tellurium.tests.sedml.test_omex)
figureFromTimecourse() (tellurium.plotting.engine.PlottingEngine method)
figureFromXY() (tellurium.plotting.engine.PlottingEngine method)
filename (tellurium.analysis.sensitivityanalysis.SensitivityAnalysis attribute)
filePathsFromExtractedArchive() (tellurium.dev.deprecated.tecombine.CombineArchive static method)
filesInDirectory() (in module tellurium.tests.helpers)
filesInDirectoryFiltered() (in module tellurium.tests.helpers)
filterIfEmpty() (in module tellurium.teconverters.antimony_sbo)
filterWithSelections() (in module tellurium.plotting.engine)
find_test_modules() (tellurium.tests.test_runner.TestRunner static method)
fix_endpoints() (in module tellurium.sedml.tesedml)
fixExt() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
fixModelRefs() (tellurium.teconverters.convert_phrasedml.phrasedmlImporter method)
fixSep() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
fjac() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
FORMAT_CSV (tellurium.sedml.data.DataDescriptionParser attribute)
FORMAT_NUML (tellurium.sedml.data.DataDescriptionParser attribute)
FORMAT_TSV (tellurium.sedml.data.DataDescriptionParser attribute)
FORMAT_URN (tellurium.sedml.data.DataDescriptionParser attribute)
formatFromFiletype() (tellurium.dev.deprecated.tecombine.Asset class method)
formatPhrasedmlResource() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
formatResource() (tellurium.teconverters.convert_phrasedml.phrasedmlImporter method)
FORMATS (tellurium.dev.deprecated.tecombine.Asset attribute)
from_time (tellurium.analysis.stochasticmodel.StochasticSimulationModel attribute)
fromAntimony() (tellurium.dev.deprecated.tecombine.Asset class method)
fromContent() (tellurium.teconverters.convert_phrasedml.phrasedmlImporter class method)
fromFile() (tellurium.dev.deprecated.tecombine.Asset class method)
(tellurium.teconverters.convert_omex.inlineOmexImporter class method)
fromPhrasedML() (tellurium.dev.deprecated.tecombine.Asset class method)
fromRaw() (tellurium.dev.deprecated.tecombine.Asset class method)
fromSBMLFile() (tellurium.teconverters.antimony_sbo.antimonySBOConverter class method)
fromSBMLString() (tellurium.teconverters.antimony_sbo.antimonySBOConverter class method)
fromString() (tellurium.teconverters.inline_omex.inlineOmex class method)
fs() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
ftest_generator() (in module tellurium.tests.sedml.test_omex)
(in module tellurium.tests.test_API)
(in module tellurium.tests.test_examples)
G
get_computed_values() (tellurium.analysis.simulator.Simulator method)
getAllSBOTerms() (tellurium.teconverters.antimony_sbo.antimonySBOConverter method)
getAntimony() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getAppDir() (in module tellurium.tellurium)
getArgsForDataset() (tellurium.plotting.engine_plotly.PlotlyFigure method)
getBoundarySpeciesAmounts() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
getBoundarySpeciesConcentrationIds() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
getBoundarySpeciesConcentrations() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getBoundarySpeciesIds() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getCellML() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getCompartmentIds() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getCompartmentSBOTerms() (tellurium.teconverters.antimony_sbo.antimonySBOConverter method)
getCompartmentVolumes() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getConservedMoietyValues() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getContent() (tellurium.teconverters.convert_omex.OmexAsset method)
getCurrentAntimony() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getCurrentCellML() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getCurrentMatlab() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getDataGeneratorsForTask() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
getDatasets() (tellurium.plotting.engine.PlottingFigure method)
getDefaultPlottingEngine() (in module tellurium.tellurium)
,
[1]
getEigenvalues() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
getEngines() (in module tellurium.plotting.factory)
getEntries() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
getFileName() (tellurium.teconverters.convert_omex.OmexAsset method)
getFloatingSpeciesAmounts() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
getFloatingSpeciesConcentrationIds() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
getFloatingSpeciesConcentrations() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getFloatingSpeciesIds() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getFormula() (tellurium.utils.misc.Accumulator method)
getFunctionSBORegex() (in module tellurium.teconverters.antimony_regex)
getFunctionStartRegex() (in module tellurium.teconverters.antimony_regex)
getGlobalParameterIds() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getGlobalParameterValues() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getIntegratorNameForKisaoID() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
getKineticLaws() (tellurium.utils.misc.ODEExtractor method)
getLastReport() (in module tellurium.tellurium)
,
[1]
getLocation() (tellurium.teconverters.convert_omex.OmexAsset method)
getLocationsByFormat() (in module tellurium.utils.omex)
getMaster() (tellurium.teconverters.convert_omex.OmexAsset method)
getMatlab() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getMergedTaggedDatasets() (tellurium.plotting.engine.PlottingFigure method)
getModelEndRegex() (in module tellurium.teconverters.antimony_regex)
getModelName() (tellurium.dev.deprecated.tecombine.OpenCombine method)
getModelStartRegex() (in module tellurium.teconverters.antimony_regex)
getModuleName() (tellurium.teconverters.convert_omex.SbmlAsset method)
getNumBoundarySpecies() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getNumCompartments() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getNumConservedMoieties() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getNumDepFloatingSpecies() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
getNumEvents() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
getNumFloatingSpecies() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getNumGlobalParameters() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getNumIndFloatingSpecies() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
getNumRateRules() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
getNumReactions() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getODEsFromModel() (in module tellurium)
(in module tellurium.utils.misc)
getODEsFromSBMLFile() (in module tellurium)
(in module tellurium.utils.misc)
getODEsFromSBMLString() (in module tellurium)
(in module tellurium.utils.misc)
getOrderedSubtasks() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
getParameterSBOTerms() (tellurium.teconverters.antimony_sbo.antimonySBOConverter method)
getPlottingEngine() (in module tellurium.tellurium)
getPlottingEngineFactory() (in module tellurium.plotting.factory)
(in module tellurium.tellurium)
getRateOfChange() (tellurium.utils.misc.ODEExtractor method)
getRatesOfChange() (tellurium.tellurium.ExtendedRoadRunner method)
(tellurium.utils.misc.ODEExtractor method)
getReactionIds() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getReactionRates() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getReactionSBOTerms() (tellurium.teconverters.antimony_sbo.antimonySBOConverter method)
getRules() (tellurium.utils.misc.ODEExtractor method)
getSBML() (tellurium.dev.deprecated.tecombine.OpenCombine method)
getSBMLAsAntimony() (tellurium.dev.deprecated.tecombine.OpenCombine method)
getSbmlAssets() (tellurium.teconverters.convert_omex.Omex method)
getSBMLFromBiomodelsURN() (in module tellurium.temiriam)
getSBORegex() (in module tellurium.teconverters.antimony_regex)
getSBOTermForElt() (tellurium.teconverters.antimony_sbo.antimonySBOConverter method)
getScatterGOs() (tellurium.plotting.engine_plotly.PlotlyFigure method)
getSEDML() (tellurium.dev.deprecated.tecombine.OpenCombine method)
getSEDMLAsPhrasedml() (tellurium.dev.deprecated.tecombine.OpenCombine method)
getSedmlAssets() (tellurium.teconverters.convert_omex.Omex method)
getSeed() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
getSpeciesSBOTerms() (tellurium.teconverters.antimony_sbo.antimonySBOConverter method)
getSupportedTestCases() (in module tellurium.testcases)
getTelluriumVersion() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
getTestModel() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
getVersionInfo() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
gillespie() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
H
hasSBOTerm() (tellurium.teconverters.antimony_sbo.antimonySBOConverter method)
I
info() (tellurium.sedml.tesedml.SEDMLCodeFactory.TaskNode method)
inIPython() (in module tellurium.tellurium)
,
[1]
inlineOmex (class in tellurium.teconverters.inline_omex)
inlineOmexImporter (class in tellurium.teconverters.convert_omex)
InlineOmexTestCase (class in tellurium.tests.test_inline_omex)
INPUT_TYPE_FILE_COMBINE (tellurium.sedml.tesedml.SEDMLTools attribute)
INPUT_TYPE_FILE_SEDML (tellurium.sedml.tesedml.SEDMLTools attribute)
INPUT_TYPE_STR (tellurium.sedml.tesedml.SEDMLTools attribute)
installPackage() (in module tellurium)
(in module tellurium.utils.package)
integrator (tellurium.analysis.stochasticmodel.StochasticSimulationModel attribute)
is_leaf() (tellurium.sedml.tesedml.SEDMLCodeFactory.TaskNode method)
isEmpty() (tellurium.sedml.tesedml.SEDMLCodeFactory.Stack method)
isExhausted() (tellurium.plotting.engine.TiledFigure method)
isInRootDir() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
(tellurium.teconverters.convert_phrasedml.phrasedmlImporter method)
isSBMLEntry() (tellurium.teconverters.convert_omex.OmexFormatDetector method)
isSEDMLEntry() (tellurium.teconverters.convert_omex.OmexFormatDetector method)
isSupportedAlgorithmForSimulationType() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
K
KisaoSedmlTestCase (class in tellurium.tests.sedml.test_kisao)
L
LatexExport (class in tellurium.teio.latex)
listContents() (in module tellurium.utils.omex)
(tellurium.dev.deprecated.tecombine.OpenCombine method)
listDetailedContents() (tellurium.dev.deprecated.tecombine.OpenCombine method)
listTestModels() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
loada() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
loadAntimonyModel() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
loadCellMLModel() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
loads() (in module tellurium.tellurium)
,
[1]
loadSBMLModel() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
loadTestModel() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
LowerTriFigure (class in tellurium.plotting.engine)
M
makeFooter() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
makeHeader() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
makeLayout() (tellurium.plotting.engine_plotly.PlotlyFigure method)
makeSBMLResourceMap() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
makeTitles() (tellurium.plotting.engine_null.PlotlyLowerTriFigure method)
(tellurium.plotting.engine_plotly.PlotlyLowerTriFigure method)
MatplotlibEngine (class in tellurium.plotting.engine_mpl)
MatplotlibFigure (class in tellurium.plotting.engine_mpl)
MEDIATYPE_PREFIX (tellurium.dev.deprecated.tecombine.Asset attribute)
model (tellurium.analysis.sensitivityanalysis.SensitivityAnalysis attribute)
(tellurium.analysis.stochasticmodel.StochasticSimulationModel attribute)
model() (in module tellurium.tellurium)
,
[1]
modelChangeToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
modelToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory method)
MyTestCase (class in tellurium.tests.test_analysis)
N
newFigure() (tellurium.plotting.engine.PlottingEngine method)
(tellurium.plotting.engine_mpl.MatplotlibEngine class method)
(tellurium.plotting.engine_null.NullEngine method)
(tellurium.plotting.engine_plotly.PlotlyEngine method)
newLowerTriFigure() (in module tellurium.plotting.api)
(tellurium.plotting.engine_null.NullEngine method)
(tellurium.plotting.engine_plotly.PlotlyEngine method)
newStackedFigure() (tellurium.plotting.engine_plotly.PlotlyEngine method)
newTiledFigure() (in module tellurium.plotting.api)
(tellurium.plotting.engine.PlottingEngine method)
(tellurium.plotting.engine_null.NullEngine method)
(tellurium.plotting.engine_plotly.PlotlyEngine method)
nextFigure() (in module tellurium.plotting.api)
(tellurium.plotting.engine.TiledFigure method)
(tellurium.plotting.engine_null.PlotlyTiledFigure method)
(tellurium.plotting.engine_plotly.PlotlyTiledFigure method)
normalizePath() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
noticesOff() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
noticesOn() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
NullEngine (class in tellurium.plotting.engine_null)
NullFigure (class in tellurium.plotting.engine_null)
nullspace() (in module tellurium)
(in module tellurium.utils.matrix)
numEntries() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
numSBMLEntries() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
O
ODEExtractor (class in tellurium.utils.misc)
Omex (class in tellurium.teconverters.convert_omex)
OmexAsset (class in tellurium.teconverters.convert_omex)
OmexFormatDetector (class in tellurium.teconverters.convert_omex)
OmexSedmlTestCase (class in tellurium.tests.sedml.test_tesedml)
OmexTestCase (class in tellurium.tests.sedml.test_omex)
OpenCombine (class in tellurium.dev.deprecated.tecombine)
outputPlot2DToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory method)
outputPlot3DToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory method)
outputPlotSettings() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
outputReportToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory method)
outputToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory method)
P
ParameterEstimation (class in tellurium.analysis.parameterestimation)
ParameterScan (class in tellurium.analysis.parameterscan)
parse() (tellurium.sedml.data.DataDescriptionParser class method)
parse_dimension_description() (tellurium.sedml.data.DataDescriptionParser class method)
parseDataDescriptions() (in module tellurium.tests.sedml.test_data)
parseMagicArgs() (in module tellurium.teconverters.inline_omex)
peek() (tellurium.sedml.tesedml.SEDMLCodeFactory.Stack method)
perform_sampling() (in module tellurium.tellurium)
phrasedmlImporter (class in tellurium.teconverters.convert_phrasedml)
PhrasedmlTestCase (class in tellurium.tests.sedml.test_phrasedml)
piecewise() (in module tellurium.sedml.mathml)
plot() (in module tellurium)
(in module tellurium.plotting.api)
(tellurium.plotting.engine.PlottingEngine method)
(tellurium.plotting.engine.PlottingFigure method)
(tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
plot2DParameterScan() (in module tellurium.analysis.parameterscan)
plot_distributed_stochastic() (in module tellurium.tellurium)
plot_stochastic_result() (in module tellurium.tellurium)
plot_text() (in module tellurium.plotting.api)
(tellurium.plotting.engine.PlottingEngine method)
plotArray() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
(tellurium.analysis.parameterscan.ParameterScan method)
(tellurium.analysis.parameterscan.SteadyStateScan method)
plotArrayFunction() (tellurium.analysis.parameterscan.ParameterScan method)
plotBifurcation() (in module tellurium.analysis.bifurcation)
plotGraduatedArray() (tellurium.analysis.parameterscan.ParameterScan method)
plotGraduatedArrayFunction() (tellurium.analysis.parameterscan.ParameterScan method)
plotImage() (in module tellurium.tellurium)
PlotlyEngine (class in tellurium.plotting.engine_plotly)
PlotlyFigure (class in tellurium.plotting.engine_plotly)
PlotlyLowerTriFigure (class in tellurium.plotting.engine_null)
(class in tellurium.plotting.engine_plotly)
PlotlyStackedFigure (class in tellurium.plotting.engine_plotly)
PlotlyTiledFigure (class in tellurium.plotting.engine_null)
(class in tellurium.plotting.engine_plotly)
plotMultiArray() (tellurium.analysis.parameterscan.ParameterScan method)
plotPolyArray() (tellurium.analysis.parameterscan.ParameterScan method)
plotPolyArrayFunction() (tellurium.analysis.parameterscan.ParameterScan method)
plotSurface() (tellurium.analysis.parameterscan.ParameterScan method)
plotTimecourse() (tellurium.plotting.engine.PlottingEngine method)
PlottingEngine (class in tellurium.plotting.engine)
PlottingEngineFactory (class in tellurium.plotting.factory)
PlottingFigure (class in tellurium.plotting.engine)
PlottingLayout (class in tellurium.plotting.engine)
plotWithLegend() (in module tellurium.tellurium)
,
[1]
pop() (tellurium.sedml.tesedml.SEDMLCodeFactory.Stack method)
pre_simulation() (tellurium.analysis.simulator.Simulator method)
printContents() (in module tellurium.utils.omex)
printVersionInfo() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
process_trace() (in module tellurium.sedml.tesedml)
product() (in module tellurium.sedml.mathml)
ps() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
push() (tellurium.analysis.simulator.Simulator method)
(tellurium.sedml.tesedml.SEDMLCodeFactory.Stack method)
R
rank() (in module tellurium)
(in module tellurium.utils.matrix)
read_numl_document() (tellurium.sedml.data.DataDescriptionParser class method)
readContentsFromManifest() (tellurium.dev.deprecated.tecombine.CombineArchive static method)
readCreator() (in module tellurium.teconverters.convert_omex)
readFromFile() (in module tellurium)
(in module tellurium.utils.misc)
readManifest() (tellurium.dev.deprecated.tecombine.OpenCombine method)
readSEDMLDocument() (tellurium.sedml.tesedml.SEDMLTools class method)
removeFile() (tellurium.dev.deprecated.tecombine.OpenCombine method)
removeFileExt() (tellurium.teconverters.convert_phrasedml.phrasedmlImporter method)
render() (tellurium.plotting.engine.PlottingFigure method)
(tellurium.plotting.engine_mpl.MatplotlibFigure method)
(tellurium.plotting.engine_null.NullFigure method)
(tellurium.plotting.engine_plotly.PlotlyFigure method)
(tellurium.plotting.engine_plotly.PlotlyStackedFigure method)
renderIfExhausted() (tellurium.plotting.engine_null.PlotlyLowerTriFigure method)
(tellurium.plotting.engine_null.PlotlyTiledFigure method)
(tellurium.plotting.engine_plotly.PlotlyLowerTriFigure method)
(tellurium.plotting.engine_plotly.PlotlyTiledFigure method)
repeatedTaskToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
resetAll() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
resetToOrigin() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
resolveModelChanges() (tellurium.sedml.tesedml.SEDMLTools static method)
RoadRunner() (in module tellurium.tellurium)
root() (in module tellurium.sedml.mathml)
rref() (in module tellurium)
(in module tellurium.utils.matrix)
rs() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
run() (tellurium.analysis.parameterestimation.ParameterEstimation method)
run_all() (tellurium.tests.test_runner.TestRunner static method)
run_case() (in module tellurium.sedml.utils)
run_example() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
runTool() (in module tellurium)
(in module tellurium.utils.misc)
rv() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
S
sample_plot() (in module tellurium.tellurium)
save() (tellurium.plotting.engine.PlottingFigure method)
(tellurium.plotting.engine_mpl.MatplotlibFigure method)
(tellurium.plotting.engine_null.NullFigure method)
(tellurium.plotting.engine_plotly.PlotlyFigure method)
saveInlineOMEX() (in module tellurium.teconverters.inline_omex)
saveToFile() (in module tellurium)
(in module tellurium.utils.misc)
(tellurium.teio.latex.LatexExport method)
saveToOneFile() (tellurium.teio.latex.LatexExport method)
sbml (tellurium.analysis.sensitivityanalysis.SensitivityAnalysis attribute)
SbmlAsset (class in tellurium.teconverters.convert_omex)
SBMLDiagram (class in tellurium.visualization.sbmldiagram)
sbmlFileToAntimony() (tellurium.teconverters.convert_antimony.antimonyConverter method)
sbmlToAntimony() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
(tellurium.teconverters.convert_antimony.antimonyConverter method)
sbmlToCellML() (in module tellurium)
(in module tellurium.tellurium)
,
[1]
SBOError
searchPackage() (in module tellurium)
(in module tellurium.utils.package)
SedmlAsset (class in tellurium.teconverters.convert_omex)
SEDMLCodeFactory (class in tellurium.sedml.tesedml)
SEDMLCodeFactory.Stack (class in tellurium.sedml.tesedml)
SEDMLCodeFactory.TaskNode (class in tellurium.sedml.tesedml)
sedmlString() (tellurium.sedml.tesedml.SEDMLCodeFactory method)
SEDMLTestCase (class in tellurium.tests.sedml.test_sedml)
SEDMLTools (class in tellurium.sedml.tesedml)
sedmlToPython() (in module tellurium.sedml.tesedml)
seed (tellurium.analysis.stochasticmodel.StochasticSimulationModel attribute)
(tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner attribute)
selectionFromVariable() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
selectionsForTask() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
SensitivityAnalysis (class in tellurium.analysis.sensitivityanalysis)
setDataFromFile() (tellurium.analysis.parameterestimation.ParameterEstimation method)
setDefaultPlottingEngine() (in module tellurium.tellurium)
,
[1]
setLastReport() (in module tellurium.tellurium)
,
[1]
setSavePlotsToPDF() (in module tellurium.tellurium)
,
[1]
setSeed() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
setUp() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
(tellurium.tests.sedml.test_omex.OmexTestCase method)
(tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
(tellurium.tests.sedml.test_sedml.SEDMLTestCase method)
(tellurium.tests.sedml.test_tesedml.OmexSedmlTestCase method)
(tellurium.tests.test_analysis.MyTestCase method)
(tellurium.tests.test_inline_omex.InlineOmexTestCase method)
(tellurium.tests.test_tellurium.TelluriumTestCase method)
setup_module() (in module tellurium.tests.sedml.test_data)
(in module tellurium.tests.test_plotting)
setXLim() (tellurium.plotting.engine.PlottingFigure method)
setYLim() (tellurium.plotting.engine.PlottingFigure method)
show() (in module tellurium.plotting.api)
(tellurium.plotting.engine.PlottingEngine method)
(tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
simpleTaskToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
simulate_sensitivity() (tellurium.analysis.simulator.Simulator method)
simulation (tellurium.analysis.sensitivityanalysis.SensitivityAnalysis attribute)
Simulator (class in tellurium.analysis.simulator)
single_check() (tellurium.tests.sedml.test_sedml.SEDMLTestCase method)
size() (tellurium.sedml.tesedml.SEDMLCodeFactory.Stack method)
sm() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
sqr() (in module tellurium.sedml.mathml)
SteadyStateScan (class in tellurium.analysis.parameterscan)
steadyStateSim() (tellurium.analysis.parameterscan.SteadyStateScan method)
step_points (tellurium.analysis.stochasticmodel.StochasticSimulationModel attribute)
StochasticSimulationModel (class in tellurium.analysis.stochasticmodel)
SUPPORTED_FORMATS (tellurium.sedml.data.DataDescriptionParser attribute)
sv() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
T
targetToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
taskToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
taskTreeToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
te_passes_tests() (tellurium.tests.test_runner.TestRunner method)
tearDown() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
(tellurium.tests.sedml.test_omex.OmexTestCase method)
(tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
(tellurium.tests.sedml.test_sedml.SEDMLTestCase method)
(tellurium.tests.sedml.test_tesedml.OmexSedmlTestCase method)
(tellurium.tests.test_analysis.MyTestCase method)
(tellurium.tests.test_inline_omex.InlineOmexTestCase method)
(tellurium.tests.test_tellurium.TelluriumTestCase method)
teardown_module() (in module tellurium.tests.sedml.test_data)
(in module tellurium.tests.test_plotting)
tellurium (module)
tellurium.analysis (module)
tellurium.analysis.bifurcation (module)
tellurium.analysis.parameterestimation (module)
tellurium.analysis.parameterscan (module)
tellurium.analysis.sensitivityanalysis (module)
tellurium.analysis.simulator (module)
tellurium.analysis.stochasticmodel (module)
tellurium.analysis.test (module)
tellurium.dev (module)
tellurium.dev.deprecated (module)
tellurium.dev.deprecated.tecombine (module)
tellurium.dev.oven (module)
tellurium.dev.oven.ndarray (module)
tellurium.dev.oven.ndarray.ndarray (module)
tellurium.plotting (module)
tellurium.plotting.api (module)
tellurium.plotting.engine (module)
tellurium.plotting.engine_mpl (module)
tellurium.plotting.engine_null (module)
tellurium.plotting.engine_plotly (module)
tellurium.plotting.factory (module)
tellurium.roadrunner (module)
tellurium.roadrunner.extended_roadrunner (module)
tellurium.sedml (module)
tellurium.sedml.data (module)
tellurium.sedml.mathml (module)
tellurium.sedml.templates (module)
tellurium.sedml.tesedml (module)
tellurium.sedml.utils (module)
tellurium.teconverters (module)
tellurium.teconverters.antimony_regex (module)
tellurium.teconverters.antimony_sbo (module)
tellurium.teconverters.convert_antimony (module)
tellurium.teconverters.convert_omex (module)
tellurium.teconverters.convert_phrasedml (module)
tellurium.teconverters.inline_omex (module)
tellurium.teio (module)
tellurium.teio.latex (module)
tellurium.tellurium (module)
,
[1]
tellurium.temiriam (module)
tellurium.testcases (module)
tellurium.tests (module)
tellurium.tests.helpers (module)
tellurium.tests.sedml (module)
tellurium.tests.sedml.test_archive (module)
tellurium.tests.sedml.test_data (module)
tellurium.tests.sedml.test_kisao (module)
tellurium.tests.sedml.test_omex (module)
tellurium.tests.sedml.test_phrasedml (module)
tellurium.tests.sedml.test_sedml (module)
tellurium.tests.sedml.test_tesedml (module)
tellurium.tests.test_analysis (module)
tellurium.tests.test_API (module)
tellurium.tests.test_examples (module)
tellurium.tests.test_inline_omex (module)
tellurium.tests.test_io (module)
tellurium.tests.test_omex (module)
tellurium.tests.test_plotting (module)
tellurium.tests.test_runner (module)
tellurium.tests.test_tellurium (module)
tellurium.tests.test_temiriam (module)
tellurium.tests.testdata (module)
tellurium.tests.testdata.sedml (module)
tellurium.tests.testdata.sedml.data (module)
tellurium.tests.testdata.sedml.data.data_creator (module)
tellurium.utils (module)
tellurium.utils.matrix (module)
tellurium.utils.misc (module)
tellurium.utils.omex (module)
tellurium.utils.package (module)
tellurium.visualization (module)
tellurium.visualization.sbmldiagram (module)
TelluriumTestCase (class in tellurium.tests.test_tellurium)
TEMPLATE_DIR (tellurium.sedml.tesedml.SEDMLCodeFactory attribute)
terminate_trace() (in module tellurium.sedml.tesedml)
test() (in module tellurium.tests.sedml.test_omex)
(in module tellurium.tests.test_API)
test_000_CombineArchiveShowCase_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_006_ho1995_fig3_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_007_beuke2017_fig6_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_008_roy2010_fig3_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_011_essunger1994_fig8_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_017_martins2016_figev3a_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_018_martins2016_fig6_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_022_kolodkin2010_figure2b_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_025_essunger1994_fig4_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_029_ouattara2008_fig3_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_034_jones2002_fig2_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_036_iwami2012_fig3_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_044_bajaria2002_fig2_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_053_hernandezvargas2013_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_055_pankavich2016_fig1_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_057_essunger1994_fig5_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_058_fisher2006_fig3a_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_067_fan2014_fig1a_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_074_fraser2002_fig1a_1b_2a_2b_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_075_pankavich2016_fig2_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_077_miao2008_fig1_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_081_chan2004_fig3_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_084_BIOMD0000000144_fig1b_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_085_BIOMD0000000169_fig5c_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_086_BIOMD0000000370_fig2_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_087_BIOMD0000000228_fig4_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_088_BIOMD0000000005_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_089_BIOMD0000000409_fig7b_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_090_BIOMD0000000150_fig1b_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_091_BIOMD0000000297_fig3_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_092_BIOMD0000000208_fig3a_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_093_BIOMD0000000193_fig2b_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_094_BIOMD0000000195_fig8a_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_095_BIOMD0000000216_fig2c_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_096_BIOMD0000000008_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_097_MODEL3897771820_fig8_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_098_BIOMD0000000186_fig3a_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_099_BIOMD0000000107_fig13_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_100_BIOMD0000000242_fig2_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_101_BIOMD0000000107_fig9_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_102_BIOMD0000000187_fig3b_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_103_BIOMD0000000056_fig2_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_104_BIOMD0000000194_fig2b_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_105_BIOMD0000000110_fig6B_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_106_BIOMD0000000087_fig5_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_107_BIOMD0000000168_fig3a_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_108_BIOMD0000000007_fig_2a_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_109_BIOMD0000000111_fi4_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_110_BIOMD0000000181_fig12_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_111_BIOMD0000000109_sf2a_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_112_BIOMD0000000207_c_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_113_BIOMD0000000196_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_114_BIOMD0000000406_fig7c_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_115_BIOMD0000000265_fig2_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_116_BIOMD0000000003_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_117_BIOMD0000000004_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_118_BIOMD0000000007_fig_2a_b_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_119_BIOMD0000000207_ab_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_120_BIOMD0000000003_fig4_sedml_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_126_L1V3_ikappab_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_130_L1V3_repressilator_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_136_brusselator_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_137_parameterScan2D_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_138_case_04_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_139_lorenz_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_140_case_08_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_141_case_06_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_142_BIOMD0000000003_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_143_BIOMD0000000012_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_144_repeatedStochastic_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_146_case_01_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_147_BorisEJB_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_148_oneStep_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_149_BorisEJBos_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_150_BM12_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_151_EllowitzRepressilator_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_152_case_10_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_153_BorisEJBsteady_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_154_BIOMD0000000139_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_155_parameterScan1D_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_156_case_09_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_157_ClockSedML_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_158_repressilator_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_159_case_11_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_160_case_05_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_161_JanaWolf_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_162_sedmlCurienJWS_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_163_case_02_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_165_case_07_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_166_case_03_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_167_BIOMD0000000140_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_168_specificationL1V2_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_169_case_12_o() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_170_sedMLBIOM21_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_171_miase_s() (tellurium.tests.sedml.test_omex.OmexTestCase method)
test_1Model1PhrasedML() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_1Model2PhrasedML() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_2Model1PhrasedML() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_2Model2PhrasedML() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_antimonyToCellML_file() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_antimonyToCellML_str() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_antimonyToSBML_file() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_antimonyToSBML_str() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_api000_te_getVersionInfo() (tellurium.tests.test_API.APITestCase method)
test_api001_te_printVersionInfo() (tellurium.tests.test_API.APITestCase method)
test_api002_te_getTelluriumVersion() (tellurium.tests.test_API.APITestCase method)
test_api003_te_noticesOff() (tellurium.tests.test_API.APITestCase method)
test_api004_te_noticesOn() (tellurium.tests.test_API.APITestCase method)
test_api005_te_saveToFile() (tellurium.tests.test_API.APITestCase method)
test_api006_te_readFromFile() (tellurium.tests.test_API.APITestCase method)
test_api007_te_loada() (tellurium.tests.test_API.APITestCase method)
test_api008_te_loadAntimonyModel() (tellurium.tests.test_API.APITestCase method)
test_api009_te_loads() (tellurium.tests.test_API.APITestCase method)
test_api010_te_loadSBMLModel() (tellurium.tests.test_API.APITestCase method)
test_api011_te_antimonyToSBML() (tellurium.tests.test_API.APITestCase method)
test_api012_te_sbmlToAntimony() (tellurium.tests.test_API.APITestCase method)
test_api013_te_getEigenvalues() (tellurium.tests.test_API.APITestCase method)
test_api014_te_plotArray() (tellurium.tests.test_API.APITestCase method)
test_api015_te_loadTestModel() (tellurium.tests.test_API.APITestCase method)
test_api016_te_getTestModel() (tellurium.tests.test_API.APITestCase method)
test_api017_te_listTestModels() (tellurium.tests.test_API.APITestCase method)
test_api018_te_LatexExport() (tellurium.tests.test_API.APITestCase method)
test_api019_te_ParameterScan() (tellurium.tests.test_API.APITestCase method)
test_api020_te_SteadyStateScan() (tellurium.tests.test_API.APITestCase method)
test_api021_r_getAntimony() (tellurium.tests.test_API.APITestCase method)
test_api022_r_getCurrentAntimony() (tellurium.tests.test_API.APITestCase method)
test_api023_r_getCellML() (tellurium.tests.test_API.APITestCase method)
test_api024_r_getCurrentCellML() (tellurium.tests.test_API.APITestCase method)
test_api025_r_getMatlab() (tellurium.tests.test_API.APITestCase method)
test_api026_r_getCurrentMatlab() (tellurium.tests.test_API.APITestCase method)
test_api027_r_exportToAntimony() (tellurium.tests.test_API.APITestCase method)
test_api028_r_exportToCellML() (tellurium.tests.test_API.APITestCase method)
test_api029_r_exportToMatlab() (tellurium.tests.test_API.APITestCase method)
test_api030_r_resetToOrigin() (tellurium.tests.test_API.APITestCase method)
test_api031_r_resetAll() (tellurium.tests.test_API.APITestCase method)
test_api032_r_getRatesOfChange() (tellurium.tests.test_API.APITestCase method)
test_api033_r_draw() (tellurium.tests.test_API.APITestCase method)
test_api034_r_plot() (tellurium.tests.test_API.APITestCase method)
test_api035_r_getSeed() (tellurium.tests.test_API.APITestCase method)
test_api036_r_setSeed() (tellurium.tests.test_API.APITestCase method)
test_api037_r_gillespie() (tellurium.tests.test_API.APITestCase method)
test_api038_r_fjac() (tellurium.tests.test_API.APITestCase method)
test_api039_r_sm() (tellurium.tests.test_API.APITestCase method)
test_api040_r_rs() (tellurium.tests.test_API.APITestCase method)
test_api041_r_fs() (tellurium.tests.test_API.APITestCase method)
test_api042_r_bs() (tellurium.tests.test_API.APITestCase method)
test_api043_r_ps() (tellurium.tests.test_API.APITestCase method)
test_api044_r_vs() (tellurium.tests.test_API.APITestCase method)
test_api045_r_dv() (tellurium.tests.test_API.APITestCase method)
test_api046_r_rv() (tellurium.tests.test_API.APITestCase method)
test_api047_r_sv() (tellurium.tests.test_API.APITestCase method)
test_api048_r_getBoundarySpeciesConcentrations() (tellurium.tests.test_API.APITestCase method)
test_api049_r_getBoundarySpeciesIds() (tellurium.tests.test_API.APITestCase method)
test_api050_r_getNumBoundarySpecies() (tellurium.tests.test_API.APITestCase method)
test_api051_r_getFloatingSpeciesConcentrations() (tellurium.tests.test_API.APITestCase method)
test_api052_r_getFloatingSpeciesIds() (tellurium.tests.test_API.APITestCase method)
test_api053_r_getNumFloatingSpecies() (tellurium.tests.test_API.APITestCase method)
test_api054_r_getGlobalParameterIds() (tellurium.tests.test_API.APITestCase method)
test_api055_r_getGlobalParameterValues() (tellurium.tests.test_API.APITestCase method)
test_api056_r_getNumGlobalParameters() (tellurium.tests.test_API.APITestCase method)
test_api057_r_getCompartmentIds() (tellurium.tests.test_API.APITestCase method)
test_api058_r_getCompartmentVolumes() (tellurium.tests.test_API.APITestCase method)
test_api059_r_getNumCompartments() (tellurium.tests.test_API.APITestCase method)
test_api060_r_getConservedMoietyValues() (tellurium.tests.test_API.APITestCase method)
test_api061_r_getNumConservedMoieties() (tellurium.tests.test_API.APITestCase method)
test_api062_r_getNumDepFloatingSpecies() (tellurium.tests.test_API.APITestCase method)
test_api063_r_getNumIndFloatingSpecies() (tellurium.tests.test_API.APITestCase method)
test_api064_r_getReactionIds() (tellurium.tests.test_API.APITestCase method)
test_api065_r_getReactionRates() (tellurium.tests.test_API.APITestCase method)
test_api066_r_getNumReactions() (tellurium.tests.test_API.APITestCase method)
test_api067_r_getNumEvents() (tellurium.tests.test_API.APITestCase method)
test_api068_r_getNumRateRules() (tellurium.tests.test_API.APITestCase method)
test_api069_te_loadCellMLModel() (tellurium.tests.test_API.APITestCase method)
test_api070_te_cellmlToAntimony() (tellurium.tests.test_API.APITestCase method)
test_api071_te_cellmlToSBML() (tellurium.tests.test_API.APITestCase method)
test_api072_te_antimonyToCellML() (tellurium.tests.test_API.APITestCase method)
test_api073_te_sbmlToCellML() (tellurium.tests.test_API.APITestCase method)
test_app2sim() (tellurium.tests.sedml.test_sedml.SEDMLTestCase method)
test_asedml3repeat() (tellurium.tests.sedml.test_sedml.SEDMLTestCase method)
test_asedmlComplex() (tellurium.tests.sedml.test_sedml.SEDMLTestCase method)
test_case_01() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_case_02() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_case_03() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_case_04() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_case_05() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_case_06() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_case_07() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_case_08() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_case_09() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_case_10() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_case_11() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_case_12() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_cellmlToAntimony_file() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_cellmlToAntimony_str() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_cellmlToSBML_file() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_cellmlToSBML_str() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_complex_simulation() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_constant_maybe() (tellurium.tests.sedml.test_sedml.SEDMLTestCase method)
test_createCombineArchiveFromDirectory() (in module tellurium.tests.test_omex)
test_draw() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_execute() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_exportAsCombine() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_getLocationsByFormat1() (in module tellurium.tests.test_omex)
test_getLocationsByFormat1_zip() (in module tellurium.tests.test_omex)
test_getLocationsByFormat2() (in module tellurium.tests.test_omex)
test_getLocationsByFormat2_zip() (in module tellurium.tests.test_omex)
test_getLocationsByFormat3() (in module tellurium.tests.test_omex)
test_getLocationsByFormat3_zip() (in module tellurium.tests.test_omex)
test_getLocationsByFormat4() (in module tellurium.tests.test_omex)
test_getLocationsByFormat4_zip() (in module tellurium.tests.test_omex)
test_getSBMLFromBiomodelsURN1() (in module tellurium.tests.test_temiriam)
test_getSeed() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_getTelluriumVersionInfo() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_getTestModel() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_jarnac_bs() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_jarnac_dv() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_jarnac_fjac() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_jarnac_fs() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_jarnac_ps() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_jarnac_rs() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_jarnac_rv() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_jarnac_sm() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_jarnac_sv() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_jarnac_vs() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_kisao_absolute_tolerance_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_absolute_tolerance_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_adams() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_bdf() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_cvode_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_cvode_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_cvode_3() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_cvode_4() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_gillespie_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_gillespie_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_gillespie_3() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_initial_time_step_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_initial_time_step_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_maximum_adams_order_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_maximum_adams_order_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_maximum_bdf_order_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_maximum_bdf_order_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_maximum_iterations_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_maximum_iterations_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_maximum_num_steps_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_maximum_num_steps_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_maximum_time_step_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_maximum_time_step_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_minimum_damping_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_minimum_damping_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_minimum_time_step_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_minimum_time_step_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_relative_tolerance_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_relative_tolerance_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_rk45_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_rk45_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_rk4_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_rk4_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_seed_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_seed_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_variable_step_size_1() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_kisao_variable_step_size_2() (tellurium.tests.sedml.test_kisao.KisaoSedmlTestCase method)
test_latex_export() (tellurium.tests.test_io.ExportTestCase method)
test_latex_export2() (tellurium.tests.test_io.ExportTestCase method)
test_listContents() (in module tellurium.tests.test_omex)
test_listTestModels() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_load_csv() (in module tellurium.tests.sedml.test_data)
test_load_csv_parameters() (in module tellurium.tests.sedml.test_data)
test_load_numl() (in module tellurium.tests.sedml.test_data)
test_load_numl_1D() (in module tellurium.tests.sedml.test_data)
test_load_numl_2D() (in module tellurium.tests.sedml.test_data)
test_load_numl_2DRC() (in module tellurium.tests.sedml.test_data)
test_load_tsv() (in module tellurium.tests.sedml.test_data)
test_loada() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_loada_file() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_loada_str() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_loadAntimonyModel_file() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_loadAntimonyModel_str() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_loadCellMLModel_file() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_loadCellMLModel_str() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_loads_file() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_loads_str() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_loadSBMLModel_file() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_loadSBMLModel_str() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_loadTestModel() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_lorenz() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_matplotlib1() (in module tellurium.tests.test_plotting)
test_omex_combineArchiveToPython() (tellurium.tests.sedml.test_tesedml.OmexSedmlTestCase method)
test_omex_csv_parameters() (in module tellurium.tests.sedml.test_data)
test_omex_executeCombineArchive() (tellurium.tests.sedml.test_tesedml.OmexSedmlTestCase method)
test_omex_extractCombineArchive1() (in module tellurium.tests.test_omex)
test_omex_extractCombineArchive2() (in module tellurium.tests.test_omex)
test_omex_extractCombineArchive3() (in module tellurium.tests.test_omex)
test_omex_extractCombineArchive4() (in module tellurium.tests.test_omex)
test_omex_jws_adlung2017_fig2gl() (in module tellurium.tests.sedml.test_data)
test_omex_plot_csv() (in module tellurium.tests.sedml.test_data)
test_omex_plot_csv_with_model() (in module tellurium.tests.sedml.test_data)
test_omex_plot_numl() (in module tellurium.tests.sedml.test_data)
test_omex_plot_numl_with_model() (in module tellurium.tests.sedml.test_data)
test_oneStep() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_parameterScan1D() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_parameterScan2D() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_parse_csv() (in module tellurium.tests.sedml.test_data)
test_parse_csv_parameters() (in module tellurium.tests.sedml.test_data)
test_parse_numl() (in module tellurium.tests.sedml.test_data)
test_parse_numl_1D() (in module tellurium.tests.sedml.test_data)
test_parse_numl_2D() (in module tellurium.tests.sedml.test_data)
test_parse_numl_2DRC() (in module tellurium.tests.sedml.test_data)
test_parse_tsv() (in module tellurium.tests.sedml.test_data)
test_plot() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_plot2DParameterScan() (tellurium.tests.test_analysis.MyTestCase method)
test_plotly1() (in module tellurium.tests.test_plotting)
test_printContents() (in module tellurium.tests.test_omex)
test_README_example() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_repeatedStochastic() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_repressilator() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_repressilatorToInlineOmex() (tellurium.tests.test_inline_omex.InlineOmexTestCase method)
test_roadrunner() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_roadrunner_tests() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_sbmlToAntimony_file() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_sbmlToAntimony_str() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_sbmlToCellML_file() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_sbmlToCellML_str() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_seed() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_setSeed() (tellurium.tests.test_tellurium.TelluriumTestCase method)
test_simpletimecourse() (tellurium.tests.sedml.test_phrasedml.PhrasedmlTestCase method)
test_single_omex() (in module tellurium.tests.sedml.test_archive)
test_via_sedml_string() (tellurium.tests.sedml.test_sedml.SEDMLTestCase method)
TestRunner (class in tellurium.tests.test_runner)
TiledFigure (class in tellurium.plotting.engine)
tiledFigure() (in module tellurium.plotting.api)
to_time (tellurium.analysis.stochasticmodel.StochasticSimulationModel attribute)
toInlineOmex() (tellurium.teconverters.convert_omex.inlineOmexImporter method)
toPhrasedml() (tellurium.teconverters.convert_phrasedml.phrasedmlImporter method)
toPython() (tellurium.sedml.tesedml.SEDMLCodeFactory method)
toString() (tellurium.utils.misc.Accumulator method)
(tellurium.utils.misc.ODEExtractor method)
tryAddSBOTerms() (tellurium.teconverters.convert_antimony.antimonyConverter method)
U
uniformRangeToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
uninstallPackage() (in module tellurium)
(in module tellurium.utils.package)
update() (tellurium.dev.deprecated.tecombine.OpenCombine method)
updateManifest() (tellurium.dev.deprecated.tecombine.OpenCombine method)
upgradePackage() (in module tellurium)
(in module tellurium.utils.package)
V
variable_step_size (tellurium.analysis.stochasticmodel.StochasticSimulationModel attribute)
vectorRangeToPython() (tellurium.sedml.tesedml.SEDMLCodeFactory static method)
VersionDict() (in module tellurium.tellurium)
,
[1]
vs() (tellurium.roadrunner.extended_roadrunner.ExtendedRoadRunner method)
(tellurium.tellurium.ExtendedRoadRunner method)
W
write() (tellurium.dev.deprecated.tecombine.CombineArchive method)
writeFiles() (tellurium.teconverters.convert_omex.Omex method)
X
xor() (in module tellurium.sedml.mathml)
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