tellurium.tests.sedml package¶
Submodules¶
tellurium.tests.sedml.test_archive module¶
Test class to check issues with single archives.
tellurium.tests.sedml.test_data module¶
Testing of SED-ML data support, i.e., DataDescription.
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tellurium.tests.sedml.test_data.
parseDataDescriptions
(sedml_path)[source]¶ Test helper functions.
Tries to parse all DataDescriptions in the SED-ML file.
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tellurium.tests.sedml.test_data.
setup_module
(module)[source]¶ setup any state specific to the execution of the given module.
tellurium.tests.sedml.test_kisao module¶
Testing the support of KISAO terms for SED-ML simulations.
test_sedml_phrasedml.py : phrasedml based tests. test_sedml_kisao.py : SED-ML kisao support test_sedml_omex.py : SED-ML tests based on Combine Archives test_sedml_sedml.py : sed-ml tests
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class
tellurium.tests.sedml.test_kisao.
KisaoSedmlTestCase
(methodName='runTest')[source]¶ Bases:
unittest.case.TestCase
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checkKisaoAlgorithmParameter
(inline_omex, kisao, name, value)[source]¶ Helper function for checking kisao parameter.
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tellurium.tests.sedml.test_omex module¶
Test that Combine archives can be executed successfully.
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class
tellurium.tests.sedml.test_omex.
OmexTestCase
(methodName='runTest')[source]¶ Bases:
unittest.case.TestCase
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test_000_CombineArchiveShowCase_o
()¶ Test failes if Exception in execution of f.
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test_002_pankavich2016_fig1_s
()¶ Test failes if Exception in execution of f.
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test_004_fraser2002_fig1a_1b_2a_2b_s
()¶ Test failes if Exception in execution of f.
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test_008_kolodkin2010_figure2b_s
()¶ Test failes if Exception in execution of f.
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test_010_martins2016_fig6_s
()¶ Test failes if Exception in execution of f.
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test_013_essunger1994_fig5_s
()¶ Test failes if Exception in execution of f.
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test_022_fan2014_fig1a_s
()¶ Test failes if Exception in execution of f.
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test_023_essunger1994_fig8_s
()¶ Test failes if Exception in execution of f.
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test_025_martins2016_figev3a_s
()¶ Test failes if Exception in execution of f.
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test_033_miao2008_fig1_s
()¶ Test failes if Exception in execution of f.
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test_034_iwami2012_fig3_s
()¶ Test failes if Exception in execution of f.
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test_040_ho1995_fig3_s
()¶ Test failes if Exception in execution of f.
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test_043_jones2002_fig2_s
()¶ Test failes if Exception in execution of f.
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test_046_fisher2006_fig3a_s
()¶ Test failes if Exception in execution of f.
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test_047_beuke2017_fig6_s
()¶ Test failes if Exception in execution of f.
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test_055_bajaria2002_fig2_s
()¶ Test failes if Exception in execution of f.
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test_060_roy2010_fig3_s
()¶ Test failes if Exception in execution of f.
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test_069_hernandezvargas2013_s
()¶ Test failes if Exception in execution of f.
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test_074_ouattara2008_fig3_s
()¶ Test failes if Exception in execution of f.
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test_075_chan2004_fig3_s
()¶ Test failes if Exception in execution of f.
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test_080_essunger1994_fig4_s
()¶ Test failes if Exception in execution of f.
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test_083_pankavich2016_fig2_s
()¶ Test failes if Exception in execution of f.
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test_087_L1V3_ikappab_o
()¶ Test failes if Exception in execution of f.
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test_092_L1V3_repressilator_o
()¶ Test failes if Exception in execution of f.
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test_098_BIOMD0000000008_sedml_o
()¶ Test failes if Exception in execution of f.
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test_099_BIOMD0000000196_sedml_o
()¶ Test failes if Exception in execution of f.
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test_100_BIOMD0000000110_fig6B_sedml_o
()¶ Test failes if Exception in execution of f.
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test_101_BIOMD0000000087_fig5_sedml_o
()¶ Test failes if Exception in execution of f.
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test_102_BIOMD0000000207_ab_sedml_o
()¶ Test failes if Exception in execution of f.
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test_103_BIOMD0000000111_fi4_sedml_o
()¶ Test failes if Exception in execution of f.
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test_104_BIOMD0000000150_fig1b_sedml_o
()¶ Test failes if Exception in execution of f.
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test_105_BIOMD0000000007_fig_2a_b_sedml_o
()¶ Test failes if Exception in execution of f.
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test_106_BIOMD0000000107_fig13_sedml_o
()¶ Test failes if Exception in execution of f.
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test_107_BIOMD0000000107_fig9_sedml_o
()¶ Test failes if Exception in execution of f.
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test_108_BIOMD0000000003_fig4_sedml_o
()¶ Test failes if Exception in execution of f.
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test_109_BIOMD0000000007_fig_2a_sedml_o
()¶ Test failes if Exception in execution of f.
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test_110_BIOMD0000000004_sedml_o
()¶ Test failes if Exception in execution of f.
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test_111_BIOMD0000000186_fig3a_sedml_o
()¶ Test failes if Exception in execution of f.
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test_112_BIOMD0000000195_fig8a_sedml_o
()¶ Test failes if Exception in execution of f.
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test_113_BIOMD0000000228_fig4_sedml_o
()¶ Test failes if Exception in execution of f.
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test_114_BIOMD0000000265_fig2_sedml_o
()¶ Test failes if Exception in execution of f.
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test_115_MODEL3897771820_fig8_sedml_o
()¶ Test failes if Exception in execution of f.
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test_116_BIOMD0000000194_fig2b_sedml_o
()¶ Test failes if Exception in execution of f.
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test_117_BIOMD0000000056_fig2_sedml_o
()¶ Test failes if Exception in execution of f.
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test_118_BIOMD0000000005_sedml_o
()¶ Test failes if Exception in execution of f.
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test_119_BIOMD0000000193_fig2b_sedml_o
()¶ Test failes if Exception in execution of f.
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test_120_BIOMD0000000168_fig3a_sedml_o
()¶ Test failes if Exception in execution of f.
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test_121_BIOMD0000000109_sf2a_sedml_o
()¶ Test failes if Exception in execution of f.
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test_122_BIOMD0000000003_sedml_o
()¶ Test failes if Exception in execution of f.
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test_123_BIOMD0000000242_fig2_sedml_o
()¶ Test failes if Exception in execution of f.
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test_124_BIOMD0000000216_fig2c_sedml_o
()¶ Test failes if Exception in execution of f.
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test_125_BIOMD0000000208_fig3a_sedml_o
()¶ Test failes if Exception in execution of f.
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test_126_BIOMD0000000207_c_sedml_o
()¶ Test failes if Exception in execution of f.
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test_127_BIOMD0000000144_fig1b_sedml_o
()¶ Test failes if Exception in execution of f.
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test_128_BIOMD0000000370_fig2_sedml_o
()¶ Test failes if Exception in execution of f.
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test_129_BIOMD0000000187_fig3b_sedml_o
()¶ Test failes if Exception in execution of f.
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test_130_BIOMD0000000169_fig5c_sedml_o
()¶ Test failes if Exception in execution of f.
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test_131_BIOMD0000000406_fig7c_sedml_o
()¶ Test failes if Exception in execution of f.
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test_132_BIOMD0000000181_fig12_sedml_o
()¶ Test failes if Exception in execution of f.
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test_133_BIOMD0000000297_fig3_sedml_o
()¶ Test failes if Exception in execution of f.
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test_134_BIOMD0000000409_fig7b_sedml_o
()¶ Test failes if Exception in execution of f.
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test_135_case_07_o
()¶ Test failes if Exception in execution of f.
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test_136_repressilator_o
()¶ Test failes if Exception in execution of f.
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test_137_oneStep_o
()¶ Test failes if Exception in execution of f.
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test_138_miase_s
()¶ Test failes if Exception in execution of f.
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test_140_BorisEJBsteady_s
()¶ Test failes if Exception in execution of f.
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test_141_case_08_o
()¶ Test failes if Exception in execution of f.
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test_142_BM12_s
()¶ Test failes if Exception in execution of f.
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test_143_BIOMD0000000012_s
()¶ Test failes if Exception in execution of f.
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test_144_BIOMD0000000003_s
()¶ Test failes if Exception in execution of f.
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test_145_JanaWolf_s
()¶ Test failes if Exception in execution of f.
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test_146_case_02_o
()¶ Test failes if Exception in execution of f.
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test_147_case_03_o
()¶ Test failes if Exception in execution of f.
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test_148_BorisEJB_s
()¶ Test failes if Exception in execution of f.
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test_149_case_09_o
()¶ Test failes if Exception in execution of f.
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test_150_parameterScan1D_o
()¶ Test failes if Exception in execution of f.
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test_151_case_06_o
()¶ Test failes if Exception in execution of f.
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test_152_case_01_o
()¶ Test failes if Exception in execution of f.
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test_153_case_11_o
()¶ Test failes if Exception in execution of f.
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test_154_EllowitzRepressilator_s
()¶ Test failes if Exception in execution of f.
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test_155_brusselator_s
()¶ Test failes if Exception in execution of f.
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test_156_case_10_o
()¶ Test failes if Exception in execution of f.
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test_157_specificationL1V2_s
()¶ Test failes if Exception in execution of f.
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test_158_BIOMD0000000139_s
()¶ Test failes if Exception in execution of f.
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test_159_case_05_o
()¶ Test failes if Exception in execution of f.
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test_160_repeatedStochastic_o
()¶ Test failes if Exception in execution of f.
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test_161_parameterScan2D_o
()¶ Test failes if Exception in execution of f.
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test_163_BIOMD0000000140_s
()¶ Test failes if Exception in execution of f.
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test_164_ClockSedML_s
()¶ Test failes if Exception in execution of f.
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test_165_case_12_o
()¶ Test failes if Exception in execution of f.
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test_166_lorenz_o
()¶ Test failes if Exception in execution of f.
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test_167_BorisEJBos_s
()¶ Test failes if Exception in execution of f.
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test_168_case_04_o
()¶ Test failes if Exception in execution of f.
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test_169_sedmlCurienJWS_s
()¶ Test failes if Exception in execution of f.
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test_170_sedMLBIOM21_s
()¶ Test failes if Exception in execution of f.
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tellurium.tests.sedml.test_omex.
test
(self=None)¶ Test failes if Exception in execution of f.
tellurium.tests.sedml.test_phrasedml module¶
Testing phrasedml.
test_sedml_phrasedml.py : phrasedml based tests. test_sedml_kisao.py : SED-ML kisao support test_sedml_omex.py : SED-ML tests based on Combine Archives test_sedml_sedml.py : sed-ml tests
tellurium.tests.sedml.test_sedml module¶
Test all the SED-ML files if code can be generated,
test_sedml_phrasedml.py : phrasedml based tests. test_sedml_kisao.py : SED-ML kisao support test_sedml_omex.py : SED-ML tests based on Combine Archives test_sedml_sedml.py : sed-ml tests